Thanks for the help and discussion! I reset the simulation to start right at missile launch for further investigation. I also turned off the SBX and T-AGM radars to only use the Tico's sensors (which makes interception almost impossible except at extremely short ranges in the original engagement).
Also, for further testing, I added another instance of the engagement but at a much closer range to the North (this one is 150 miles instead of 500 miles). I am not sure if any of this information will be useful, but here are some behaviors of the missiles I found in this closer situation:
1) The Tico detected the launch of the DF-26s with its SPY-1 and tracked their ascent. SM-3s were launched at a range of ~150 miles.
2) The SPY-1 lost the track of the DF-26s as they climbed through 196.2 km, but the SM-3s continued to ascend while connected to datalink.
3) Roughly 4 minutes later, a 'Weapon Issue' message appeared in the log, as the SM-3s decided that the datalink information was not firm.
4) The SM-3s immediately pitched down at this point and began to descend. It appears they were attempting to hit the position of the last contact to the DF-26 (5 minutes old at that point) rather than the expected position on the trajectory.
5) The SM-3s continued to the last known position, crossing this area with an altitude of approximately 196.2 km (the real missile was of course much closer and much higher at this point). Most of the SM-3s still had a large (>3 nm) lateral deviation, but 1 or 2 of them occasionally passed the expired track with no error. All missed and no 'Weapon Endgame' report was sent in the message log.
6) The DF-26 continued untracked by the Tico until reentry. Occasionally, the radar would never even pick up on the reentering targets (only IR and visual sensors), which meant that an 'Insufficient data for BMD engagement' message prevented SM-2/3/6 to launch. However, this short range terminal behavior was far less consistent that the other behaviors described above.
NOTE: I ran the simulation again but with the SBX and T-AGM radars on (just turn on at save file start). The US could see the missiles up to 1412.3 km on ascent this time. Everything was the same as described above except...
4) The odd pitch down behavior at datalink loss was not replicated this time, even if the Tico could not see the missiles with its own sensors. The SM-3s continued to climb instead of suddenly descending.
5) The SM-3s reached the DF-26 with the same approximate altitude of the real-time missile track this time, but all missed. All but 1 or 2 still had large lateral deviations, and a 'Weapon Endgame' message was never sent for any of the missiles.
6) Terminal engagement behavior was not valid because of presence of two cruisers (situation design error, not game error).
These behaviors appeared on all the tests of this situation on my computer. Please let me know if you get similar results or if you have more ideas for testing. Thanks for any help!